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2013. “Does evidence matter? How middle school students make decisions about socioscientific issues”
2013. “Looking into the black box: simulating the role of self-fertilization and mortality in the genetic structure of Macrocystis pyrifera” 22: 4842–4854.
2014. “Detecting change in intertidal species richness over time on sandy beaches: calibrating across sampling designs” 150: 58-66.
2014. “Integration of no-take marine reserves in the assessment of data-limited fisheries” 5: 451–458.
 MaKinster, J; Trautman, N; Barnett, M 2014. “CoastLines: Commitment, Comfort, Competence, Empowerment, and Relevance in Professional Development”
 Keulartz, Jozef; Drenthen, Martin; Proctor, James D 2009. “The trouble with plovers” : 75-89.
2014. “Interactive effects of elevated temperature and pCO2 on early-life-history stages of the giant kelp Macrocystis pyrifera” 457: 51-58.
2014. “Sea otters are recolonizing southern California in fits and starts” 5(5): 50.
2013. “High and distinct range-edge genetic diversity despite local bottlenecks” 8(7): e68646.
 Mooney, H; Zavaleta, E . “Shallow rocky reefs and kelp forests”
 Mooney, H; Zavaleta, E . “Sandy Beach Ecosystems”
2014. “Centennial changes in North Pacific anoxia linked to tropical trade winds” 345: 665-668.
2014. “Exploring local adaptation and the ocean acidification seascape – studies in the California Current Large Marine Ecosystem” 11: 1053-1064.
2013. “Poleward propagating subinertial alongshore surface currents off the U.S. West Coast” 118: 1-16.
2013. “A multi-decade time series of kelp forest community structure at the California Channel Islands” 94: 2655.
2014. “Metrics to assess ecological condition, change, and impacts in sandy beach ecosystems” 144: 322-335.
2013. “The relative importance of kelp detritus as a component of suspended particulate organic matter in giant kelp (Macrocystis pyrifera) forests” 493: 113-125.
2014. “Biological and chemical responses in a temporarily open/closed estuary to variable freshwater inputs” 743: 97-113.
 Mooney, H; Zavaleta, E . “California’s river ecosystems”
2014. “Patch definition in metapopulation analysis: a graph theory approach to solve the mega-patch problem” 95: 316–328.