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Beardsley, Timothy M. (ed.) 2003. “A Special Section on the US Long Term Ecological Research Network” 53 (1): 1-116.
Brock, William A. ;Carpenter, Stephen R. ;Scheffer, Marten  Cumming, G. 2008. “Regime shifts, environmental signals, uncertainty, and policy choice” : 180-206.
Hansen, Gretchen J. A. ;Ives, Anthony R. ;Vander Zanden, M. Jake ;Carpenter, Stephen R. 2013. “Are rapid transitions between invasive and native species caused by alternative stable states, and does it matter?” 94 (10): 2207–2219.
McMahon, Katherine D. ;Read, Emily K. 2013. “Microbial contributions to phosphorus cycling in eutrophic lakes and wastewater” 67: 199-219.
McDonald, Cory P. ;Urban, Noel R. 2010. “Using a model selection criterion to identify appropriate complexity in aquatic biogeochemical models” 221 (3): 428-432.
Edmunds, P. J. ;Nozawa, Y. ;Villanueva, R. D. 2014. “Refuges modulate coral recruitment in the Caribbean and the Pacific.” 454: 78-84. doi:10.1016/j.jembe.2014.02.009.
Adam, T. C.;Brooks, A. J.;Holbrook, S. J.;Schmitt, R. J.;Washburn, L.;Bernardi, G. 2014. “How will coral reef fish communities respond to climate-driven disturbances? Insight from landscape-scale perturbations.” 176: 285-296. doi:10.1007/s00442-014-3011-x.
Dornelas, M.;Gotelli, N. J.;McGill, B.;Shimadzu, H.;Moyes, F.;Sievers, C.;Magurran, A. E. 2014. “Assemblage time series revel biodiversity change but not systematic loss.” 344: 296-299. doi:10.1126/science.1248484.
Pochon, X.;Putnam, H. M.;Gates, R. D. 2014. “Multi-gene analysis of Symbiodinium dinoflagellates: a perspective on rarity, symbiosis, and evolution.” 2: e394. doi:10.7717/peerj.394.
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Tootell, J. S. ;Steele, M. A. 2014. “Vermetid gastropods reduce foraging by herbivorous fishes on algae on coral reefs.” 33 (4): 1145-1151. doi:10.1007/s00338-014-1181-y.
2013. “Drivers of microbial respiration and net N mineralization at the continental scale” 60: 65-76.
2013. “Temperature and CO2 additively regulate physiology, morphology and genomic responses of larval sea urchins, Strongylocentrotus purpuratus” 280 no. 1759: 220130155.
2013. “Natural variation and the capacity to adapt to ocean acidification in the keystone sea urchin Strongylocentrotus purpuratus” 19: 2536–2546.
 Dumontier, Michel; Courtot, Melanie 2011. “Protege Extensions for Scientist-Oriented Modeling of Observation and Measurement Semantics”
2013. “Coastal long term ecological research: Introduction to the special issue” 26(3): 14-17.
2014. “Evaluating the importance of phytoplankton community structure to the optical properties of the Santa Barbara Channel, California” 59: 927-946.
2013. “Multiple sources and forms of nitrogen sustain year-round kelp growth on the inner continental shelf of the Santa Barbara Channel” 26(3): 114-123.
2013. “Interactions between sea urchin grazing and prey diversity on temperate rocky reef communities” 94(7): 1636-1646.
Batt, Ryan D. ;Carpenter, Stephen R. 2012. “Free-water lake metabolism: addressing noisy time series with a Kalman filter” 10 (1): 20–30.